A toolbox for protein design

Electromembrane Processes, a Toolbox for Advanced Separations

SPRINT: side-chain prediction inference toolbox for multistate protein design

UNLABELLED SPRINT is a software package that performs computational multistate protein design using state-of-the-art inference on probabilistic graphical models. The input to SPRINT is a list of protein structures, the rotamers modeled for each structure and the pre-calculated rotamer energies. Probabilistic inference is performed using the belief propagation or A* algorithms, and dead-end elim...

investigating the feasibility of a proposed model for geometric design of deployable arch structures

deployable scissor type structures are composed of the so-called scissor-like elements (sles), which are connected to each other at an intermediate point through a pivotal connection and allow them to be folded into a compact bundle for storage or transport. several sles are connected to each other in order to form units with regular polygonal plan views. the sides and radii of the polygons are...

A Toolbox for Design of Diagnosis Systems

Design of diagnosis systems is a complex task that involves many different steps. Full understanding of all different parts of the design procedure requires deep knowledge on theory from a wide variety of subjects. Thus, to encourage the use of results from diagnosis research it is highly desirable to have software support in the design process. This paper describes ongoing work for determining...

A Combinatorial Toolbox for Protein Sequence Design and Landscape Analysis in the Grand Canonical Model

In modern biology, one of the most important research problems is to understand how protein sequences fold into their native 3D structures. To investigate this problem at a high level, one wishes to analyze the protein landscapes, i.e., the structures of the space of all protein sequences and their native 3D structures. Perhaps the most basic computational problem at this level is to take a tar...